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All categories

All categories

[category|SW.1|1. Cellular processes]

[category|SW.1.1|1.1. Cell envelope and cell division]

[category|SW.1.1.1|1.1.1. Cell wall synthesis]

[category|SW.1.1.1.1|1.1.1.1. Biosynthesis of peptidoglycan]

[category|SW.1.1.1.2|1.1.1.2. Autolytic activity required for peptidoglycan synthesis (cell elongation)]

[category|SW.1.1.1.3|1.1.1.3. Biosynthesis of lipoteichoic acid]

[category|SW.1.1.1.4|1.1.1.4. Biosynthesis of teichoic acid]

[category|SW.1.1.1.5|1.1.1.5. Biosynthesis of teichuronic acid]

[category|SW.1.1.1.6|1.1.1.6. Export of anionic polymers and attachment to peptidoglycan]

[category|SW.1.1.1.7|1.1.1.7. Penicillin-binding proteins]

[category|SW.1.1.1.8|1.1.1.8. Biosynthesis of the carrier lipid undecaprenylphosphate]

[category|SW.1.1.2|1.1.2. Cell shape]

[category|SW.1.1.3|1.1.3. Cell wall degradation/ turnover]

[category|SW.1.1.3.1|1.1.3.1. Autolysis]

[category|SW.1.1.3.2|1.1.3.2. Autolysis/ based on similarity]

[category|SW.1.1.3.3|1.1.3.3. Utilization of cell wall components]

[category|SW.1.1.3.4|1.1.3.4. Endopeptidases]

[category|SW.1.1.3.5|1.1.3.5. N-acetyl--D-glucosaminidases]

[category|SW.1.1.3.6|1.1.3.6. Cell wall degradation/ turnover/ Additional genes]

[category|SW.1.1.4|1.1.4. Capsule biosynthesis and degradation]

[category|SW.1.1.5|1.1.5. Cell wall/ other]

[category|SW.1.1.6|1.1.6. Cell wall/ other/ based on similarity]

[category|SW.1.1.7|1.1.7. Membrane dynamics]

[category|SW.1.1.8|1.1.8. Cell division]

[category|SW.1.1.8.1|1.1.8.1. The Min system]

[category|SW.1.1.8.2|1.1.8.2. Cell division / Other genes]

[category|SW.1.1.9|1.1.9. Cell division/ based on similarity]

[category|SW.1.2|1.2. Transporters]

[category|SW.1.2.1|1.2.1. ABC transporters]

[category|SW.1.2.1.1|1.2.1.1. Importers]

[category|SW.1.2.1.1.1|1.2.1.1.1. Uptake of carbon sources]

[category|SW.1.2.1.1.2|1.2.1.1.2. Uptake of amino acids]

[category|SW.1.2.1.1.3|1.2.1.1.3. Uptake of peptides]

[category|SW.1.2.1.1.4|1.2.1.1.4. Uptake of compatible solutes for osmoprotection]

[category|SW.1.2.1.1.5|1.2.1.1.5. Uptake of iron/ siderophores]

[category|SW.1.2.1.1.6|1.2.1.1.6. Uptake of ions]

[category|SW.1.2.1.1.8|1.2.1.1.8. ABC transporters of unknown function]

[category|SW.1.2.1.2|1.2.1.2. Exporters]

[category|SW.1.2.1.2.1|1.2.1.2.1. Efflux of antibiotics]

[category|SW.1.2.1.2.2|1.2.1.2.2. Export of antibiotic substances]

[category|SW.1.2.1.2.3|1.2.1.2.3. Export of peptides]

[category|SW.1.2.1.2.4|1.2.1.2.4. Export of cell wall components]

[category|SW.1.2.1.2.5|1.2.1.2.5. Export of ions]

[category|SW.1.2.1.2.6|1.2.1.2.6. Exporters of unknown function]

[category|SW.1.2.1.3|1.2.1.3. Regulatory ABC transporters]

[category|SW.1.2.2|1.2.2. Phosphotransferase system]

[category|SW.1.2.2.1|1.2.2.1. General PTS proteins]

[category|SW.1.2.2.2|1.2.2.2. Sugar specific PTS proteins]

[category|SW.1.2.3|1.2.3. ECF transporter]

[category|SW.1.2.3.1|1.2.3.1. The general components of the ECF transporters]

[category|SW.1.2.3.2|1.2.3.2. The substrate-specific S components of the ECF transporters]

[category|SW.1.2.3.3|1.2.3.3. Class I ECF transporter]

[category|SW.1.2.4|1.2.4. Transporters/ other]

[category|SW.1.2.4.1|1.2.4.1. Amino acid transporters]

[category|SW.1.2.4.1.1|1.2.4.1.1. Solute:sodium symporter family]

[category|SW.1.2.4.1.2|1.2.4.1.2. Other amino acid transporters]

[category|SW.1.2.4.2|1.2.4.2. Peptide transporter]

[category|SW.1.2.4.3|1.2.4.3. Carbohydrate transporter]

[category|SW.1.2.4.4|1.2.4.4. Transporter for organic acids]

[category|SW.1.2.4.5|1.2.4.5. Metal ion transporter]

[category|SW.1.2.4.6|1.2.4.6. Nucleotide/ nucleoside transporter]

[category|SW.1.2.4.7|1.2.4.7. Transporter for cofactors]

[category|SW.1.2.4.8|1.2.4.8. Uptake of other small ions]

[category|SW.1.2.4.9|1.2.4.9. Uptake of compatible solutes]

[category|SW.1.2.4.10|1.2.4.10. Siderophore exporters]

[category|SW.1.2.4.11|1.2.4.11. Other exporters]

[category|SW.1.2.4.12|1.2.4.12. Other transporters]

[category|SW.1.2.4.13|1.2.4.13. Metal ion exporters]

[category|SW.1.2.4.14|1.2.4.14. Multidrug exporters]

[category|SW.1.3|1.3. Homeostasis]

[category|SW.1.3.1|1.3.1. Metal ion homeostasis (K, Na, Ca, Mg)]

[category|SW.1.3.1.1|1.3.1.1. Magnesium uptake/ efflux]

[category|SW.1.3.1.2|1.3.1.2. Sodium uptake/ export]

[category|SW.1.3.1.3|1.3.1.3. Potassium uptake/ export]

[category|SW.1.3.1.4|1.3.1.4. Metal ion homeostasis/ Other]

[category|SW.1.3.2|1.3.2. Trace metal homeostasis (Cu, Zn, Ni, Mn, Mo)]

[category|SW.1.3.2.1|1.3.2.1. Copper]

[category|SW.1.3.2.2|1.3.2.2. Manganese]

[category|SW.1.3.2.3|1.3.2.3. Zinc]

[category|SW.1.3.2.4|1.3.2.4. Trace metals/ Other]

[category|SW.1.3.3|1.3.3. Acquisition of iron]

[category|SW.1.3.3.1|1.3.3.1. ABC transporters for the uptake of iron/ siderophores]

[category|SW.1.3.3.2|1.3.3.2. Elemental iron transport system]

[category|SW.1.3.3.3|1.3.3.3. Acquisition of iron / Other]

[category|SW.1.3.4|1.3.4. Acquisition of iron/ based on similarity]

[category|SW.1.3.5|1.3.5. PH homeostasis]

[category|SW.2|2. Metabolism]

[category|SW.2.1|2.1. Electron transport and ATP synthesis]

[category|SW.2.1.1|2.1.1. Regulators of electron transport]

[category|SW.2.1.2|2.1.2. Respiration]

[category|SW.2.1.2.1|2.1.2.1. Terminal oxidases]

[category|SW.2.1.2.2|2.1.2.2. Anaerobic respiration]

[category|SW.2.1.2.3|2.1.2.3. Anaerobic respiration/based on similarity]

[category|SW.2.1.2.4|2.1.2.4. Respiration/ other]

[category|SW.2.1.3|2.1.3. Electron transport/ other]

[category|SW.2.1.4|2.1.4. Electron transport/ other/ based on similarity]

[category|SW.2.1.5|2.1.5. ATP synthesis]

[category|SW.2.1.5.1|2.1.5.1. ATPase]

[category|SW.2.1.5.2|2.1.5.2. Substrate-level phosphorylation]

[category|SW.2.2|2.2. Carbon metabolism]

[category|SW.2.2.1|2.2.1. Carbon core metabolism]

[category|SW.2.2.1.1|2.2.1.1. Glycolysis]

[category|SW.2.2.1.2|2.2.1.2. Gluconeogenesis]

[category|SW.2.2.1.3|2.2.1.3. Pentose phosphate pathway]

[category|SW.2.2.1.4|2.2.1.4. TCA cycle]

[category|SW.2.2.1.5|2.2.1.5. Overflow metabolism]

[category|SW.2.2.2|2.2.2. Utilization of specific carbon sources]

[category|SW.2.2.2.1|2.2.2.1. Utilization of organic acids]

[category|SW.2.2.2.2|2.2.2.2. Utilization of acetoin]

[category|SW.2.2.2.3|2.2.2.3. Utilization of glycerol/ glycerol-3-phosphate]

[category|SW.2.2.2.4|2.2.2.4. Utilization of ribose]

[category|SW.2.2.2.5|2.2.2.5. Utilization of xylan/ xylose]

[category|SW.2.2.2.6|2.2.2.6. Utilization of arabinan/ arabinose/ arabitol]

[category|SW.2.2.2.7|2.2.2.7. Utilization of fructose]

[category|SW.2.2.2.8|2.2.2.8. Utilization of galactose]

[category|SW.2.2.2.9|2.2.2.9. Utilization of mannose]

[category|SW.2.2.2.10|2.2.2.10. Utilization of mannitol]

[category|SW.2.2.2.11|2.2.2.11. Utilization of glucitol]

[category|SW.2.2.2.12|2.2.2.12. Utilization of rhamnose]

[category|SW.2.2.2.13|2.2.2.13. Utilization of gluconate]

[category|SW.2.2.2.14|2.2.2.14. Utilization of glucarate/galactarate]

[category|SW.2.2.2.15|2.2.2.15. Utilization of hexuronate]

[category|SW.2.2.2.16|2.2.2.16. Utilization of inositol]

[category|SW.2.2.2.17|2.2.2.17. Utilization of amino sugars]

[category|SW.2.2.2.18|2.2.2.18. Utilization of beta-glucosides]

[category|SW.2.2.2.19|2.2.2.19. Utilization of sucrose]

[category|SW.2.2.2.20|2.2.2.20. Utilization of trehalose]

[category|SW.2.2.2.21|2.2.2.21. Utilization of melibiose]

[category|SW.2.2.2.22|2.2.2.22. Utilization of maltose]

[category|SW.2.2.2.23|2.2.2.23. Utilization of starch/ maltodextrin]

[category|SW.2.2.2.24|2.2.2.24. Utilization of galactan]

[category|SW.2.2.2.25|2.2.2.25. Utilization of glucomannan]

[category|SW.2.2.2.26|2.2.2.26. Utilization of pectin]

[category|SW.2.2.2.27|2.2.2.27. Utilization of other polymeric carbohydrates]

[category|SW.2.2.2.28|2.2.2.28. Utilization of other pentoses and hexoses]

[category|SW.2.3|2.3. Amino acid/ nitrogen metabolism]

[category|SW.2.3.1|2.3.1. Biosynthesis/ acquisition of amino acids]

[category|SW.2.3.1.1|2.3.1.1. Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation]

[category|SW.2.3.1.2|2.3.1.2. Biosynthesis/ acquisition of proline]

[category|SW.2.3.1.3|2.3.1.3. Biosynthesis/ acquisition of proline/ based on similarity]

[category|SW.2.3.1.4|2.3.1.4. Biosynthesis/ acquisition of arginine]

[category|SW.2.3.1.5|2.3.1.5. Biosynthesis/ acquisition of aspartate/ asparagine]

[category|SW.2.3.1.6|2.3.1.6. Biosynthesis/ acquisition of lysine/ threonine]

[category|SW.2.3.1.7|2.3.1.7. Biosynthesis/ acquisition of lysine/ threonine/ based on similarity]

[category|SW.2.3.1.8|2.3.1.8. Biosynthesis/ acquisition of serine/ glycine/ alanine]

[category|SW.2.3.1.9|2.3.1.9. Biosynthesis/ acquisition of cysteine]

[category|SW.2.3.1.10|2.3.1.10. Biosynthesis/ acquisition of methionine/ S-adenosylmethionine]

[category|SW.2.3.1.11|2.3.1.11. Biosynthesis/ acquisition of methionine/ S-adenosylmethionine/ based on similarity]

[category|SW.2.3.1.12|2.3.1.12. Biosynthesis/ acquisition of branched-chain amino acids]

[category|SW.2.3.1.13|2.3.1.13. Biosynthesis/ acquisition of aromatic amino acids]

[category|SW.2.3.1.14|2.3.1.14. Biosynthesis/ acquisition of histidine]

[category|SW.2.3.2|2.3.2. Utilization of amino acids]

[category|SW.2.3.2.1|2.3.2.1. Utilization of glutamine/ glutamate]

[category|SW.2.3.2.2|2.3.2.2. Utilization of proline]

[category|SW.2.3.2.3|2.3.2.3. Utilization of proline/ based on similarity]

[category|SW.2.3.2.4|2.3.2.4. Utilization of arginine/ ornithine]

[category|SW.2.3.2.5|2.3.2.5. Utilization of histidine]

[category|SW.2.3.2.6|2.3.2.6. Utilization of asparagine/ aspartate]

[category|SW.2.3.2.7|2.3.2.7. Utilization of alanine/ serine]

[category|SW.2.3.2.8|2.3.2.8. Utilization of threonine/ glycine]

[category|SW.2.3.2.9|2.3.2.9. Utilization of branched-chain amino acids]

[category|SW.2.3.2.10|2.3.2.10. Utilization of gamma-amino butyric acid]

[category|SW.2.3.3|2.3.3. Utilization of nitrogen sources other than amino acids]

[category|SW.2.3.3.1|2.3.3.1. Utilization of nitrate/ nitrite]

[category|SW.2.3.3.2|2.3.3.2. Utilization of urea]

[category|SW.2.3.3.3|2.3.3.3. Utilization of amino sugars]

[category|SW.2.3.3.4|2.3.3.4. Utilization of peptides]

[category|SW.2.3.3.5|2.3.3.5. Utilization of proteins]

[category|SW.2.3.4|2.3.4. Putative amino acid transporter]

[category|SW.2.4|2.4. Lipid metabolism]

[category|SW.2.4.1|2.4.1. Utilization of lipids]

[category|SW.2.4.1.1|2.4.1.1. Utilization of phospholipids]

[category|SW.2.4.1.2|2.4.1.2. Utilization of phospholipids/ based on similarity]

[category|SW.2.4.1.3|2.4.1.3. Utilization of fatty acids]

[category|SW.2.4.1.4|2.4.1.4. Utilization of lipids/ other]

[category|SW.2.4.2|2.4.2. Biosynthesis of lipids]

[category|SW.2.4.2.1|2.4.2.1. Biosynthesis of fatty acids]

[category|SW.2.4.2.2|2.4.2.2. Biosynthesis of phospholipids]

[category|SW.2.4.2.3|2.4.2.3. Biosynthesis of isoprenoids]

[category|SW.2.4.3|2.4.3. Lipid metabolism/ other]

[category|SW.2.5|2.5. Nucleotide metabolism]

[category|SW.2.5.1|2.5.1. Utilization of nucleotides]

[category|SW.2.5.2|2.5.2. Biosynthesis/ acquisition of nucleotides]

[category|SW.2.5.2.1|2.5.2.1. Biosynthesis/ acquisition of purine nucleotides]

[category|SW.2.5.2.2|2.5.2.2. Biosynthesis/ acquisition of purine nucleotides/ based on similarity]

[category|SW.2.5.2.3|2.5.2.3. Purine salvage and interconversion]

[category|SW.2.5.2.4|2.5.2.4. Biosynthesis/ acquisition of pyrimidine nucleotides]

[category|SW.2.5.2.5|2.5.2.5. Biosynthesis/ acquisition of nucleotides/ other]

[category|SW.2.5.2.6|2.5.2.6. Biosynthesis/ acquisition of nucleotides/ other/ based on similarity]

[category|SW.2.5.3|2.5.3. Metabolism of signalling nucleotides]

[category|SW.2.5.4|2.5.4. Nucleotide metabolism/ other]

[category|SW.2.6|2.6. Additional metabolic pathways]

[category|SW.2.6.1|2.6.1. Biosynthesis of cell wall components]

[category|SW.2.6.1.1|2.6.1.1. Biosynthesis of peptidoglycan]

[category|SW.2.6.1.2|2.6.1.2. Biosynthesis of lipoteichoic acid]

[category|SW.2.6.1.3|2.6.1.3. Biosynthesis of teichoic acid]

[category|SW.2.6.1.4|2.6.1.4. Biosynthesis of teichuronic acid]

[category|SW.2.6.1.5|2.6.1.5. Biosynthesis of the carrier lipid undecaprenylphosphate]

[category|SW.2.6.2|2.6.2. Biosynthesis of cofactors]

[category|SW.2.6.2.1|2.6.2.1. Biosynthesis/ acquisition of biotin]

[category|SW.2.6.2.2|2.6.2.2. Biosynthesis/ acquisition of riboflavin/ FAD]

[category|SW.2.6.2.3|2.6.2.3. Biosynthesis/ acquisition of thiamine]

[category|SW.2.6.2.4|2.6.2.4. Biosynthesis of coenzyme A]

[category|SW.2.6.2.5|2.6.2.5. Biosynthesis of folate]

[category|SW.2.6.2.6|2.6.2.6. Biosynthesis of heme/ siroheme]

[category|SW.2.6.2.7|2.6.2.7. Biosynthesis of lipoic acid]

[category|SW.2.6.2.8|2.6.2.8. Biosynthesis of menaquinone]

[category|SW.2.6.2.9|2.6.2.9. Biosynthesis of menaquinone/ based on similarity]

[category|SW.2.6.2.10|2.6.2.10. Biosynthesis of molybdopterin]

[category|SW.2.6.2.11|2.6.2.11. Biosynthesis of NAD(P)]

[category|SW.2.6.2.12|2.6.2.12. Biosynthesis of pyridoxal phosphate]

[category|SW.2.6.3|2.6.3. Phosphate metabolism]

[category|SW.2.6.4|2.6.4. Sulfur metabolism]

[category|SW.2.6.4.1|2.6.4.1. Conversion of S-methyl cysteine to cysteine]

[category|SW.2.6.4.2|2.6.4.2. sulfur metabolism/ general]

[category|SW.2.6.4.3|2.6.4.3. Conversion of S-(2-succino)cysteine to cysteine]

[category|SW.2.6.5|2.6.5. Iron metabolism]

[category|SW.2.6.5.1|2.6.5.1. Acquisition of iron / Other]

[category|SW.2.6.5.2|2.6.5.2. Acquisition of iron/ based on similarity]

[category|SW.2.6.5.3|2.6.5.3. Biosynthesis of iron-sulfur clusters]

[category|SW.2.6.5.4|2.6.5.4. ABC transporters for the uptake of iron/ siderophores]

[category|SW.2.6.5.5|2.6.5.5. Elemental iron transport system]

[category|SW.2.6.5.6|2.6.5.6. Iron export]

[category|SW.2.6.6|2.6.6. Miscellaneous metabolic pathways]

[category|SW.2.6.6.1|2.6.6.1. Biosynthesis of antibacterial compounds]

[category|SW.2.6.6.2|2.6.6.2. Biosynthesis of bacillithiol]

[category|SW.2.6.6.3|2.6.6.3. Biosynthesis of dipicolinate]

[category|SW.2.6.6.4|2.6.6.4. Biosynthesis of glycine betaine]

[category|SW.2.6.6.5|2.6.6.5. Biosynthesis of glycogen]

[category|SW.2.6.6.6|2.6.6.6. Metabolism of polyamines]

[category|SW.2.6.6.7|2.6.6.7. Biosynthesis of rhamnose (for the exosporium)]

[category|SW.2.7|2.7. Detoxification reactions]

[category|SW.3|3. Information processing]

[category|SW.3.1|3.1. Genetics]

[category|SW.3.1.1|3.1.1. DNA replication]

[category|SW.3.1.2|3.1.2. DNA replication/ based on similarity]

[category|SW.3.1.3|3.1.3. DNA condensation/ segregation]

[category|SW.3.1.4|3.1.4. DNA restriction/ modification]

[category|SW.3.1.5|3.1.5. DNA repair/ recombination]

[category|SW.3.1.5.1|3.1.5.1. Excision of prophages]

[category|SW.3.1.5.2|3.1.5.2. A/P endonucleases]

[category|SW.3.1.5.3|3.1.5.3. Spore-encoded non-homologous end joining system]

[category|SW.3.1.5.4|3.1.5.4. Double strand breaks repair]

[category|SW.3.1.5.5|3.1.5.5. Oxidized guanine (GO) DNA repair system]

[category|SW.3.1.5.6|3.1.5.6. Other proteins]

[category|SW.3.1.6|3.1.6. DNA repair/ recombination/ based on similarity]

[category|SW.3.1.7|3.1.7. Genetic competence]

[category|SW.3.1.8|3.1.8. Genetics/ other/ based on similarity]

[category|SW.3.2|3.2. RNA synthesis and degradation]

[category|SW.3.2.1|3.2.1. Transcription]

[category|SW.3.2.1.1|3.2.1.1. RNA polymerase]

[category|SW.3.2.1.2|3.2.1.2. Sigma factors]

[category|SW.3.2.1.3|3.2.1.3. Transcription elongation/ termination]

[category|SW.3.2.1.4|3.2.1.4. Prophage/ phage transcription]

[category|SW.3.2.2|3.2.2. RNA chaperones]

[category|SW.3.2.3|3.2.3. DEAD-box RNA helicases]

[category|SW.3.2.4|3.2.4. RNases]

[category|SW.3.2.4.1|3.2.4.1. Exoribonucleases]

[category|SW.3.2.4.2|3.2.4.2. Endoribonucleases]

[category|SW.3.2.4.3|3.2.4.3. RNA pyrophosphohydrolase]

[category|SW.3.2.4.4|3.2.4.4. RNases/ Other]

[category|SW.3.2.5|3.2.5. RNase/ based on similarity]

[category|SW.3.3|3.3. Protein synthesis, modification and degradation]

[category|SW.3.3.1|3.3.1. Translation]

[category|SW.3.3.1.1|3.3.1.1. Ribosomal RNA]

[category|SW.3.3.1.2|3.3.1.2. rRNA modification and maturation]

[category|SW.3.3.1.3|3.3.1.3. rRNA modification and maturation/ based on similarity]

[category|SW.3.3.1.4|3.3.1.4. Ribosomal proteins]

[category|SW.3.3.1.5|3.3.1.5. Ribosomal protein/ based on similarity]

[category|SW.3.3.1.6|3.3.1.6. Ribosome assembly]

[category|SW.3.3.1.7|3.3.1.7. tRNA]

[category|SW.3.3.1.8|3.3.1.8. tRNA modification and maturation]

[category|SW.3.3.1.9|3.3.1.9. tRNA modification and maturation/ based on similarity]

[category|SW.3.3.1.10|3.3.1.10. Aminoacyl-tRNA synthetases]

[category|SW.3.3.1.11|3.3.1.11. Translation factors]

[category|SW.3.3.1.12|3.3.1.12. Translation/ other]

[category|SW.3.3.1.13|3.3.1.13. Translation/ other/ based on similarity]

[category|SW.3.3.1.14|3.3.1.14. Translation factor modification and maturation]

[category|SW.3.3.2|3.3.2. Chaperones/ protein folding]

[category|SW.3.3.3|3.3.3. Chaperone/ protein folding/ based on similarity]

[category|SW.3.3.4|3.3.4. Protein modification]

[category|SW.3.3.4.1|3.3.4.1. Protein maturation]

[category|SW.3.3.4.2|3.3.4.2. Protein kinases]

[category|SW.3.3.4.3|3.3.4.3. Protein kinase/ based on similarity]

[category|SW.3.3.4.4|3.3.4.4. Protein phosphatases]

[category|SW.3.3.4.5|3.3.4.5. Protein acetylases/ deacetylases]

[category|SW.3.3.4.6|3.3.4.6. Protein acetylase/ deacetylase/ based on similarity]

[category|SW.3.3.4.7|3.3.4.7. Protein deaminase]

[category|SW.3.3.4.8|3.3.4.8. Protein modification/ other]

[category|SW.3.3.5|3.3.5. Protein secretion]

[category|SW.3.3.6|3.3.6. Protein secretion/ based on similarity]

[category|SW.3.3.7|3.3.7. Proteolysis]

[category|SW.3.3.7.1|3.3.7.1. Protein quality control]

[category|SW.3.3.7.2|3.3.7.2. Extracellular feeding proteases]

[category|SW.3.3.7.3|3.3.7.3. Proteolysis during sporulation/ germination]

[category|SW.3.3.7.4|3.3.7.4. Additional proteins involved in proteolysis]

[category|SW.3.4|3.4. Regulation of gene expression]

[category|SW.3.4.1|3.4.1. Sigma factors and their control]

[category|SW.3.4.1.1|3.4.1.1. Sigma factors]

[category|SW.3.4.1.2|3.4.1.2. Control of sigma factors]

[category|SW.3.4.2|3.4.2. Transcription factors and their control]

[category|SW.3.4.2.1|3.4.2.1. Two-component system response regulators]

[category|SW.3.4.2.2|3.4.2.2. Control of two-component response regulators]

[category|SW.3.4.2.2.1|3.4.2.2.1. Two-component sensor kinase]

[category|SW.3.4.2.2.2|3.4.2.2.2. Response regulator aspartate phosphatase]

[category|SW.3.4.2.2.3|3.4.2.2.3. Control of response regulators/ other]

[category|SW.3.4.2.3|3.4.2.3. PRD-type regulators]

[category|SW.3.4.2.4|3.4.2.4. Control of PRD-type regulators]

[category|SW.3.4.2.5|3.4.2.5. Transcription factors/ other]

[category|SW.3.4.2.6|3.4.2.6. Transcription factor/ other/ based on similarity]

[category|SW.3.4.2.7|3.4.2.7. Control of transcription factor (other than two-component system)]

[category|SW.3.4.3|3.4.3. Trigger enzyme]

[category|SW.3.4.3.1|3.4.3.1. Trigger enzymes of the PTS that control the activity of PRD-containing transcription factors]

[category|SW.3.4.3.2|3.4.3.2. Trigger enzymes that control gene expression by protein-protein interaction with transcription factors]

[category|SW.3.4.3.3|3.4.3.3. Trigger enzymes that act directly as transcription factors by binding DNA]

[category|SW.3.4.3.4|3.4.3.4. Trigger enzyme that acts by binding of a specific RNA element]

[category|SW.3.4.3.5|3.4.3.5. Trigger enzymes that control transcription in a yet unknown way]

[category|SW.3.4.4|3.4.4. RNA binding regulators]

[category|SW.3.4.5|3.4.5. Regulators of core metabolism]

[category|SW.3.4.6|3.4.6. Transition state regulators]

[category|SW.3.4.7|3.4.7. phosphorelay]

[category|SW.3.4.7.1|3.4.7.1. The kinases]

[category|SW.3.4.7.2|3.4.7.2. Proteins controlling the activity of the kinases]

[category|SW.3.4.7.3|3.4.7.3. The phosphotransferases]

[category|SW.3.4.7.4|3.4.7.4. The ultimate target]

[category|SW.3.4.7.5|3.4.7.5. Phosphatases controlling the phosphorelay]

[category|SW.3.4.7.6|3.4.7.6. Other protein controlling the activity of the phosphorelay]

[category|SW.3.4.8|3.4.8. Quorum sensing]

[category|SW.3.4.9|3.4.9. Other regulators]

[category|SW.4|4. Lifestyles]

[category|SW.4.1|4.1. Exponential and early post-exponential lifestyles]

[category|SW.4.1.1|4.1.1. Motility and chemotaxis]

[category|SW.4.1.1.1|4.1.1.1. Signal transduction in motility and chemotaxis]

[category|SW.4.1.1.1.1|4.1.1.1.1. Soluble signalling proteins]

[category|SW.4.1.1.1.2|4.1.1.1.2. Coupling proteins]

[category|SW.4.1.1.1.3|4.1.1.1.3. Soluble chemoreceptors]

[category|SW.4.1.1.1.4|4.1.1.1.4. Membrane-bound chemoreceptors]

[category|SW.4.1.1.1.5|4.1.1.1.5. Additional chemotaxis signal transduction and regulatory proteins]

[category|SW.4.1.1.2|4.1.1.2. Flagellar proteins]

[category|SW.4.1.1.3|4.1.1.3. Flagellar proteins/ based on similarity]

[category|SW.4.1.1.4|4.1.1.4. Motility and chemotaxis/ other]

[category|SW.4.1.2|4.1.2. Biofilm formation]

[category|SW.4.1.2.1|4.1.2.1. Matrix polysaccharide synthesis]

[category|SW.4.1.2.2|4.1.2.2. Amyloid protein synthesis, secretion and assembly]

[category|SW.4.1.2.3|4.1.2.3. Repellent surface layer]

[category|SW.4.1.2.4|4.1.2.4. Regulation]

[category|SW.4.1.2.5|4.1.2.5. Other proteins required for biofilm formation]

[category|SW.4.1.2.6|4.1.2.6. Other proteins required for efficient pellicle biofilm formation]

[category|SW.4.1.3|4.1.3. Genetic competence]

[category|SW.4.1.4|4.1.4. Swarming]

[category|SW.4.1.5|4.1.5. Sliding]

[category|SW.4.2|4.2. Sporulation]

[category|SW.4.2.1|4.2.1. Sporulation proteins]

[category|SW.4.2.1.1|4.2.1.1. Spore coat proteins]

[category|SW.4.2.1.1.1|4.2.1.1.1. Class I]

[category|SW.4.2.1.1.2|4.2.1.1.2. Class II]

[category|SW.4.2.1.1.3|4.2.1.1.3. Class III]

[category|SW.4.2.1.1.4|4.2.1.1.4. Class IV]

[category|SW.4.2.1.1.5|4.2.1.1.5. Class V]

[category|SW.4.2.1.1.7|4.2.1.1.7. Class VI]

[category|SW.4.2.1.1.8|4.2.1.1.8. Not yet assigned]

[category|SW.4.2.1.2|4.2.1.2. Spore coat protein/ based on similarity]

[category|SW.4.2.1.3|4.2.1.3. Small acid-soluble spore proteins]

[category|SW.4.2.1.4|4.2.1.4. Sporulation proteins/ other]

[category|SW.4.2.1.5|4.2.1.5. Newly identified sporulation proteins (based on transcription profiling)]

[category|SW.4.2.2|4.2.2. phosphorelay]

[category|SW.4.2.2.1|4.2.2.1. The kinases]

[category|SW.4.2.2.2|4.2.2.2. Proteins controlling the activity of the kinases]

[category|SW.4.2.2.3|4.2.2.3. The phosphotransferases]

[category|SW.4.2.2.4|4.2.2.4. The ultimate target]

[category|SW.4.2.2.5|4.2.2.5. Phosphatases controlling the phosphorelay]

[category|SW.4.2.2.6|4.2.2.6. Other protein controlling the activity of the phosphorelay]

[category|SW.4.2.3|4.2.3. Sporulation/ other]

[category|SW.4.2.4|4.2.4. Germination]

[category|SW.4.2.4.1|4.2.4.1. Germinant receptors]

[category|SW.4.2.4.2|4.2.4.2. Additional germination proteins]

[category|SW.4.2.5|4.2.5. Germination/ based on similarity]

[category|SW.4.3|4.3. Coping with stress]

[category|SW.4.3.1|4.3.1. General stress proteins (controlled by SigB)]

[category|SW.4.3.2|4.3.2. Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]

[category|SW.4.3.3|4.3.3. Acid stress proteins (controlled by YvrI-YvrHa)]

[category|SW.4.3.4|4.3.4. Heat shock proteins]

[category|SW.4.3.5|4.3.5. Cold stress proteins]

[category|SW.4.3.6|4.3.6. Coping with hyper-osmotic stress]

[category|SW.4.3.7|4.3.7. Coping with hypo-osmotic stress]

[category|SW.4.3.8|4.3.8. Resistance against oxidative and electrophile stress]

[category|SW.4.3.9|4.3.9. Resistance against oxidative and electrophile stress/ based on similarity]

[category|SW.4.3.10|4.3.10. Resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)]

[category|SW.4.3.11|4.3.11. Resistance against toxic metals]

[category|SW.4.3.12|4.3.12. Resistance against toxic metals/ based on similarity]

[category|SW.4.3.13|4.3.13. Resistance against toxins/ antibiotics]

[category|SW.4.3.14|4.3.14. Resistance against toxins/ antibiotics/ based on similarity]

[category|SW.4.3.15|4.3.15. Biosynthesis of antibacterial compounds]

[category|SW.4.3.16|4.3.16. Biosynthesis of antibacterial compounds/ based on similarity]

[category|SW.4.3.17|4.3.17. Toxins, antitoxins and immunity against toxins]

[category|SW.4.3.17.1|4.3.17.1. Type 1 TA systems]

[category|SW.4.3.17.2|4.3.17.2. Type 2 TA systems]

[category|SW.4.3.17.3|4.3.17.3. Toxins, antitoxins and immunity/ Additional genes]

[category|SW.4.3.18|4.3.18. Toxins, antitoxins and immunity against toxins/ based on similarity]

[category|SW.4.4|4.4. Lifestyles/ miscellaneous]

[category|SW.5|5. Prophages and mobile genetic elements]

[category|SW.5.1|5.1. Prophages]

[category|SW.5.1.1|5.1.1. PBSX prophage]

[category|SW.5.1.2|5.1.2. SP-beta prophage]

[category|SW.5.1.3|5.1.3. Skin element]

[category|SW.5.1.4|5.1.4. Prophage 1]

[category|SW.5.1.5|5.1.5. Prophage 3]

[category|SW.5.1.6|5.1.6. Phage-related functions]

[category|SW.5.2|5.2. Mobile genetic elements]

[category|SW.5.2.1|5.2.1. ICEBs1]

[category|SW.5.2.2|5.2.2. Additional genes]

[category|SW.6|6. Groups of genes]

[category|SW.6.1|6.1. Essential genes]

[category|SW.6.2|6.2. Membrane proteins]

[category|SW.6.3|6.3. GTP-binding proteins]

[category|SW.6.4|6.4. Phosphoproteins]

[category|SW.6.4.1|6.4.1. Phosphorylation on an Arg residue]

[category|SW.6.4.2|6.4.2. Phosphorylation on an Asp residue]

[category|SW.6.4.3|6.4.3. Phosphorylation on a Cys residue]

[category|SW.6.4.4|6.4.4. Phosphorylation on a His residue]

[category|SW.6.4.5|6.4.5. Phosphorylation on a Ser residue]

[category|SW.6.4.6|6.4.6. Phosphorylation on a Thr residue]

[category|SW.6.4.7|6.4.7. Phosphorylation on a Tyr residue]

[category|SW.6.4.8|6.4.8. Phosphorylation on either a Ser, Thr or Tyr residue]

[category|SW.6.4.9|6.4.9. Phosphoproteins / Other]

[category|SW.6.5|6.5. Universally conserved proteins]

[category|SW.6.6|6.6. Poorly characterized/ putative enzymes]

[category|SW.6.7|6.7. Proteins of unknown function]

[category|SW.6.8|6.8. Short peptides]

[category|SW.6.9|6.9. NcRNA]

[category|SW.6.9.1|6.9.1. 6S RNA]

[category|SW.6.9.2|6.9.2. tmRNA]

[category|SW.6.9.3|6.9.3. Small cytoplasmatic RNA]

[category|SW.6.9.4|6.9.4. RNA component of RNase P]

[category|SW.6.9.5|6.9.5. Regulatory RNAs]

[category|SW.6.9.6|6.9.6. Antisense RNAs of toxin/antitoxin systems]

[category|SW.6.9.7|6.9.7. Small RNAs with unknown functions]

[category|SW.6.10|6.10. Pseudogenes]

[category|SW.6.11|6.11. Efp-dependent proteins]

[category|SW.6.12|6.12. Secreted proteins]